PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.K0K3F
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 354aa    MW: 39553.4 Da    PI: 4.4771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.K0K3FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11178222554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h ++Er+RR++i ++f  L  l+P +     kK++Ka++L   ++Y+k+L
  Araip.K0K3F 178 HIIAERKRREKISQSFIALAALVPGL-----KKMDKASVLGDSIKYVKEL 222
                  899***********************.....9****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.142173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15178235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8178222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-11178227No hitNo description
Gene3DG3DSA:4.10.280.102.7E-16178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-13179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEKSNTPMDT SAASWLSELE IDEDYNFFPD LDFDLVDEED FLSHELIASE DLQGKSALQD  60
QSLSAECNSK ELSNCCTDEM MSFEEMLRNI NDETFSPKLS SSSSQILSFD NSDSLSSSPP  120
NNTTQFYELK NSLNQRQDSV ETPNNNNNKK SDSLNTQNVE AKSTSTLGKR SPSHAHDHII  180
AERKRREKIS QSFIALAALV PGLKKMDKAS VLGDSIKYVK ELKERLAVLE EESKKTKALP  240
TVVLNKAEQL HAHGAAVFSS LCEEETIDGL PQVEAREWGQ QVLLRIHCWK EEGILVRILS  300
EIQSLQLMVL NSSVLSFGDS ILDITIIVQA GEGYNLTLNE LVKNLRMATL KLMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0990832e-50BT099083.1 Soybean clone JCVI-FLGm-26F18 unknown mRNA.
GenBankKT0311252e-50KT031125.1 Glycine max clone HN_CCL_79 bHLH transcription factor (Glyma17g16720.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174778.10.0PREDICTED: transcription factor bHLH19-like isoform X2
TrEMBLI1K2I71e-105I1K2I7_SOYBN; BHLH transcription factor
STRINGGLYMA05G23530.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-50bHLH family protein